The USF Genomics Computational Core is the computational branch of the USF Genomics Core. The computational core provides consulting and data analysis of RNA and DNA sequencing, proteomics, metagenomics, database management, and pipeline design and development. The consultants have access to USF’s High-Performance Computing (HPC) cluster and a variety of open-source software and proprietary to analyze data. The analyzed data are securely stored on HIPAA-compliant component of USF’s HPC cluster. HPC infrastructure and hardware supporting USF Genomics and the USF Genomics Core Facility is managed by the USF Department of Research Computing.
The following services are available for USF users:
Computational Core Service Overview
General Hourly-Based Services
- Computational Core Consultation
- Data Cleaning, Releasing, Submission, Transfer
- Sequence Alignment and Mapping
- Sequencing Data Quality Control
- Functional Annotation
- Pathway Reconstruction
- Project-based Method/Study Design
- Application Development
- Database Design
- Management Manuscript/Report Writing
General Project-Based Services
- Bulk RNAseq Analysis
- Chip-seq Analysis
- DNA Methylation Analysis
- DNAseq Analysis
- Metagenomics Analysis
- Proteomics data analysis
- Metabolomics/Lipidomics data analysis
- Single-cell data analysis
Work requests for computational services must be submitted through iLab.
For more information, contact genomics@usf.edu