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Welcome to the USF Microbiomes Institute
The USF Microbiomes Institute is an initiative to merge and integrate interdisciplinary researchers and departments from the University of South Florida (USF), USF Health, Tampa General Hospital (TGH), and Moffitt Cancer Center, with a special working focus on microbiomes studies in soil, water, plant, animals, food and human health.
The Institute intends to join different departments and colleges, from engineering to business, and create opportunities for transdisciplinary projects with new approaches for microbiomes studies. We are composed of several working groups such as Education and Training, Data Analysis, Infrastructures, Core Facilities, and Scientific programs, we integrate academics with industry, promoting partnerships with colleges and departments to share experiences and enhance the research and knowledge in the microbiome field.
“Investigating microbiomes truly offers a revolutionary approach to human and animal medicine. In addition, understanding the impact of environmental changes on soil and oceans microbiomes is key to food safety, security and sovereignty. The USF Microbiomes Institute aims to provide solutions and is based on a holistic and transdisciplinary approach to these challenges, combining education to basic and applied research, as well as on site activities with urban farms.”Christian Brechot, Founder and co-director of the USF Microbiomes Institute
Global Experts Convene in Tampa to Explore the Cutting-Edge Science of Microbiomes and Biodiversity for Global Health Solutions
Tampa, Florida – March 4, 2025 – A groundbreaking gathering of international experts at the 2nd International Conference on Microbiomes, Biodiversity, and Their Impact on Global and One Health highlights the transformative potential of microbiome science in addressing the world's most urgent environmental and health challenges. The event, hosted by USF Health’s Microbiomes Institute, Institut Mérieux, and the Global Virus Network (GVN), was held February 3-5, 2025, at the University of South Florida (USF) in Tampa.
"This international conference emphasizes the need for a truly interdisciplinary approach to humanity's enormous challenge regarding biodiversity, food, and nutrition. The USF Health Microbiomes Institute is fully committed to contributing to identifying solutions to this major global threat."
Dr. Christian Bréchot, director of the USF Health Microbiomes Institute and senior associate dean for research in global affairs in the USF Health Morsani College of Medicine as well as vice chair of the board of directors and president emeritus of the Global Virus Network (GVN).
The innovative event, with participants from the U.S., France, Italy, Austria, and Switzerland, was built upon the success of the first conference held in Annecy, France, in October 2023, bringing together an impressive lineup of experts from diverse fields, including soil, ocean and medical microbiology, molecular biology, agri-food sustainable practices, and global health. The conference served as a crucial platform for cross-disciplinary dialogue, where leaders from intergovernmental organizations, including the World Health Organization (WHO) and the Food and Agriculture Organization (FAO) of the United Nations, as well as academia, industry, and the private sector, came together to address pressing global challenges related to microbiomes and biodiversity.
“This conference, which brought together a community of recognized experts from different sectors including oceans, agri-food, and biomedical, represents a unique opportunity to implement concrete, transdisciplinary projects centered on the analysis and utilization of microbiomes, with a major impact on the development of sustainable aquaculture and agricultural practices and the health of our ecosystems.”
Dr. Marc Bonneville, vice president for medical and scientific affairs, Institut Mérieux.
Fostering a Holistic Approach to Global Health
The conference focused on the critical intersection between microbiomes, ecosystems, and human health, emphasizing the importance of integrated solutions to global issues such as soil degradation, food insecurity, viral pandemics, and the accelerating climate crisis. One of the central themes was the potential of microbiome research to foster innovative solutions for regenerative agriculture, sustainable aquaculture, and more effective public health strategies. Nutrition, microbial ecology, and health experts explored how a deeper understanding of microbiomes could inform eco-responsible agricultural practices and therapeutic approaches.
“We are pleased to have co-hosted this important international conference. This arena lends itself to studies that cross the boundaries of scientific disciplines, which makes this kind of collaboration and conversation even more important. This is an especially exciting time for researchers who study microbiomes, and international collaboration and dialogue will help accelerate the already rapid drumbeat of new developments in this field.”
Charles J. Lockwood, MD, MHCM, executive vice president of USF Health and dean of the USF Health Morsani College of Medicine.
"The University of South Florida is committed to being a driver of innovation and helping solve complex challenges facing our society. We are proud to host this international conference that brings together the expertise of academia, industry and policymakers who play an essential role in developing lasting solutions that benefit the health of our planet and our communities"
Rhea Law, USF President.
"As an institution deeply committed to advancing knowledge and solutions for global challenges, USF was honored to provide the backdrop for meaningful dialogue around microbiomes, biodiversity, and health at the 2nd International Conference on Microbiomes, Biodiversity, and Their Impact on Global and One Health. The transdisciplinary groundwork established at the conference will inspire new ideas, strengthen partnerships, and ignite a shared vision for global health, and I look forward to seeing its impact unfold."Dr. Prasant Mohapatra, USF Provost and Executive Vice President
The Role of Microbiomes in One Health Solutions
The conference underscored the urgency of integrating microbiome-based approaches within a One Health framework, recognizing the interconnectedness of human, animal, and environmental health. As microbiomes are integral to all these systems, advancing their understanding is vital to building resilient, sustainable, and healthy ecosystems. Working groups and sessions were designed to foster collaboration across disciplines to address critical issues such as climate change, biodiversity loss, and emerging infectious diseases, emphasizing alignment with the United Nations’ Sustainable Development Goals.
Looking to the Future
The event served not only as an opportunity for knowledge exchange but also as a springboard for future projects and action plans to address the most urgent global health and environmental challenges. The collaborations initiated during the conference will help catalyze groundbreaking research and policy shifts that will contribute to long-term, sustainable solutions.
The conference demonstrated that through a collaborative, interdisciplinary approach, microbiomes can be harnessed as a key tool in driving One Health solutions and promoting our planet's and its inhabitants' health.
About the Organizers
- USF Health Microbiomes Institute: An initiative to integrate interdisciplinary researchers focusing on microbiomes studies across soil, water, plants, animals, food, and human health.
- Institut Mérieux: A global player in microbiology diagnostics and food safety dedicated to improving public health through scientific research and innovation.
- Global Virus Network: A worldwide coalition of virology experts dedicated to enhancing pandemic preparedness through research, diagnostics, treatments, vaccines, and education, ensuring a swift and equitable global response to future viral threats.
For more information on the conference and future initiatives, please visit the USF Health Microbiomes Institute page or contact Nora Samaranayake at nsamaranayake@usf.edu.
Microbiome Research
Welcome from the USF Center for Microbiome Research
"Microbiome research is revolutionizing our understanding of health, revealing its profound influence from early development to aging. At USF Microbiomes Institute, our multidisciplinary team is at the forefront of this discovery—decoding how the microbiome shapes longevity, brain function, metabolic health, cancer, infectious diseases and disease resistance. We are pioneering solutions to harness microbiome science for a healthier future."
Hariom Yadav, PhD, Co-Director, USF Microbiomes Institute and Director of USF Center for Microbiome Research
Unlocking the Power of Microbiomes
USF Microbiomes Institute’s Key Initiatives
At the USF Microbiomes Institute, we are driving transformative research and innovation to harness the potential of microbiomes for human and environmental health. Our interdisciplinary approach is built on five key pillars, each playing a vital role in advancing microbiome science:
Data Analytics & Core Facilities – Supporting research with state-of-the-art biorepositories, bioinformatics, and data hubs for cutting-edge discoveries.
Flagship Program: Metropolitan Food Project – Investigating the connection between biodiversity, soil health, nutrition, and human well-being to promote sustainable food systems.
Training & Education – Providing online courses, webinars, and seminars to equip researchers, students, and industry leaders with the latest microbiome insights.
Microbiome Research Awards – Funding collaborative, pilot, and ignite projects to spark new ideas and breakthroughs in microbiome science.
Flagship Program: Microbiomes in Extremes of Aging – Exploring the role of microbiomes in aging, neuroscience, and cancer to improve health outcomes across the lifespan.
Our work is reshaping the future of microbiome research, bringing together experts from diverse fields to tackle global challenges.
Join us on this journey! Explore our initiatives and learn how you can be part of the microbiome revolution.
Thank You for Attending the 2025 USF Microbiomes Institute Annual Town Hall Meeting
On behalf of the USF Microbiomes Institute, we sincerely thank you for joining us at our Annual Town Hall Meeting. Your presence and engagement made this gathering a success, and we truly appreciate your contributions to our discussions on advancing microbiome research, innovation, and collaboration
Thank You for Attending the 2025 USF Microbiomes Institute Annual Town Hall Meeting
Microbiome News and Publications
USF Health researchers developing probiotic cocktail that may help ward off dementia
If unhealthy viruses and bacteria can increase the risk of dementia, can scientists find the right mix of "good" bacteria to lower the risk of cognitive decline? University of South Florida researcher Hariom Yadav has developed a promising cocktail.
USF Health researchers developing probiotic cocktail that may help ward off dementia
Microbiomes should be incorporated into The One Health Joint Plan of Action.
Thanks to the collaborative efforts of all attendees from the 2nd International Conference on Microbiomes, Biodiversity, and Their Impact on Global and One Health, held at the University of South Florida in February 2025, the USF Microbiomes Institute proudly presents the first group publication.
Microbiomes should be incorporated into The One Health Joint Plan of Action.
Global experts convene to explore the cutting-edge science of microbiomes
Experts from around the world recently gathered at USF Health to talk about advances in the science of microbiomes.
Global experts convene to explore the cutting-edge science of microbiomes
Two USF faculty members elected fellows of American Academy of Microbiology
University of South Florida Professors Christian Bréchot, MD, PhD, and Lindsey Shaw, PhD, have been elected fellows of the 2025 class of the American Academy of Microbiology.
Two USF faculty members elected fellows of American Academy of Microbiology
USF Microbiomes Institute Survey and Affiliation Invitiation
USF Microbiomes Institute Survey and Affiliation Invitation
If you are interested in becoming an affiliate of the USF Microbiomes Institute, please fill out the survey and send your CV to graca@usf.edu.