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Welcome to the USF Microbiomes Institute
The USF Microbiomes Institute is an initiative to merge and integrate interdisciplinary researchers and departments from the University of South Florida (USF), USF Health, and Moffitt Cancer Center, with a special working focus on microbiomes studies in soil, water, plant, animals, food and human health.
The Institute intends to join different departments and colleges, from engineering to business, and create opportunities for transdisciplinary projects with new approaches for microbiomes studies. We are composed of several working groups such as Education and Training, Data Analysis, Infrastructures, Core Facilities, and Scientific programs, we integrate academics with industry, promoting partnerships with colleges and departments to share experiences and enhance the research and knowledge in the microbiome field.
“Investigating microbiomes truly offers a revolutionary approach to human and animal medicine. In addition, understanding the impact of environmental changes on soil and oceans microbiomes is key to food safety, security and sovereignty. The USF Microbiomes Institute aims to provide solutions and is based on a holistic and transdisciplinary approach to these challenges, combining education to basic and applied research, as well as on site activities with urban farms.”
Christian Brechot, MD, PhD
Founder and co-director of the USF Microbiomes Institute
Microbiome Research
USF Health researchers link gut health to age-related illnesses
Researchers at USF Health are discovering links between the bacteria in our gut and a number of age-related conditions, including dementia.
In conjunction with their research, USF doctors are developing a customized yogurt that can help restore a patient’s gut health. The yogurt is used to introduce the specific healthy microbes the patient’s system is lacking. “We are designing this for the older population,” said Dr. Hariom Yadav, Director of Microbiome Research at USF Health. “We will also prepare them in different flavors too, so they can have their choice of the flavors.” said Dr. Yadav.
Participants Needed
Research indicates that abnormalities in Microbiome exacerbate aging in gut and brain.
You are invited to participate in our research study, if:
- Your age is 60 years or older.
- You are cognitively healthy.
- You can also participate if you have history of mild cognitive impairment-early stage of memory loss or other cognitive ability loss/ dementia/ Alzheimer’s Disease.
Unlocking the Power of Microbiomes
USF Microbiomes Institute’s Key Initiatives
At the USF Microbiomes Institute, we are driving transformative research and innovation to harness the potential of microbiomes for human and environmental health. Our interdisciplinary approach is built on five key pillars, each playing a vital role in advancing microbiome science:
Data Analytics & Core Facilities – Supporting research with state-of-the-art biorepositories, bioinformatics, and data hubs for cutting-edge discoveries.
Flagship Program: Metropolitan Food Project – Investigating the connection between biodiversity, soil health, nutrition, and human well-being to promote sustainable food systems.
Training & Education – Providing online courses, webinars, and seminars to equip researchers, students, and industry leaders with the latest microbiome insights.
Microbiome Research Awards – Funding collaborative, pilot, and ignite projects to spark new ideas and breakthroughs in microbiome science.
Flagship Program: Microbiomes in Extremes of Aging – Exploring the role of microbiomes in aging, neuroscience, and cancer to improve health outcomes across the lifespan.
Our work is reshaping the future of microbiome research, bringing together experts from diverse fields to tackle global challenges.
Join us on this journey! Explore our initiatives and learn how you can be part of the microbiome revolution.
Microbiome News and Publications
Two USF faculty members elected fellows of American Academy of Microbiology
University of South Florida Professors Christian Bréchot, MD, PhD, and Lindsey Shaw, PhD, have been elected fellows of the 2025 class of the American Academy of Microbiology.
Two USF faculty members elected fellows of American Academy of Microbiology
The Microbiome and Aging: Unlocking New Frontiers in Health Longevity
Research conducted by the USF Microbiomes Institute and the MiaGB Consortium is uncovering the significant link between microbial communities and host biology. This understanding could lead to new therapies for age-related condition.
The Microbiome and Aging: Unlocking New Frontiers in Health Longevity
Microbiomes in Extremes of Aging: A New Editorial in Experimental Gerontology
The editorial in Experimental Gerontology explores microbiomes' role in aging, highlighting their impact on Alzheimer’s, cancer immunotherapy, myocardial infarction, and tryptophan metabolism. These insights pave the way for microbiome-targeted interventions to enhance health and longevity in olde
Microbiomes in Extremes of Aging: A New Editorial in Experimental Gerontology
State grant advances USF Health research on how diet-related changes
The Florida Department of Health Ed and Ethel Moore Alzheimer’s Disease Research Program has awarded the USF total expected funds of $743,661 over the next four years for a multisite clinical study titled “Role of the Microbiome in the Aging Gut and Brain of Floridian Older Adults.